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Troubleshooting Guide for SSL Certificates Failing to Generate Private Keys

Time : 2026-01-30 16:34:45
Edit : DNS.COM

  SSL certificates are almost an unavoidable step in deploying a website. You might successfully apply for a certificate, but then be unable to find the private key; or you might encounter an error when generating a CSR (Certificate Signing Request), indicating that the private key cannot be created. These kinds of problems happen frequently and often confuse beginners: the certificate has been issued, so why can't I use it? Where did the private key go? In fact, "SSL certificate cannot generate private key" is not a single problem, but the result of several common configuration errors combined. By understanding the SSL workflow and troubleshooting step by step, most cases can be resolved independently.

  I. First, understand: How is the SSL private key generated?

  Many beginners believe that "the certificate platform will generate the private key for me," which is a common misconception.

  The correct process is:

  Step 1: Generate the private key locally.

  Step 2: Generate a CSR (Certificate Signing Request) based on the private key.

  Step 3: Submit the CSR to the CA.

  Step 4: The CA returns a public key certificate.

  In other words, the private key always exists only on your local server or local computer; the CA cannot and will not generate a private key for you.

  Therefore, if there is a problem during the private key generation stage, even if the certificate is successfully issued later, HTTPS cannot be deployed properly.

  II. Common Manifestations of "Unable to Generate Private Key"

  In actual operation and maintenance, the following situations are commonly encountered:

  OpenSSL error, unable to create key file

  Certificate application successful via panel, but server cannot find private key

  CSR can be generated, but private key file is empty

  Accidentally deleting key file causes certificate installation failure

  Missing private key when migrating certificate from another server

  These all fall under the category of "SSL private key anomalies".

  Ⅲ、Troubleshooting methods for OpenSSL private key generation failure

  The most common way to generate it is with OpenSSL:

openssl genrsa -out server.key 2048

  If this step fails, it's usually due to the following reasons:

  1. Insufficient write permissions to the current directory

  Symptoms:

unable to write 'random state'

  or:

Permission denied

  Solution:

  Switch to a writable directory:

cd /root

  Or create manually:

mkdir /ssl && cd /ssl

  Execute the generation command again.

  2. Insufficient System Random Numbers

  On some low-configuration VPSs, insufficient entropy can cause the system to freeze.

  You can first install the following tool:

yum install -y haveged
systemctl start haveged

  Regenerate the private key.

  3. Missing OpenSSL components

  Check version:

openssl version

  If not:

yum install -y openssl openssl-devel

  IV. What if a CSR can be generated but the private key cannot be found?

  Some website owners generate CSRs using control panels, such as BT Panel, cPanel, and Plesk. In this case, the private key is usually automatically saved, but the path is often hidden.

  Common paths for BT Panel:

/www/server/panel/vhost/cert/

  Search for private key:

find / -name "*.key"

  If the key file for the corresponding domain is found, it can be used directly.

  V. Remedial Measures for Certificates Issued but Private Keys Lost

  This is the most troublesome situation.

  It needs to be clear: Once the private key is lost, the original certificate cannot be used.

  The reason is simple: the public key certificate must be paired with the original private key.

  There is only one solution: Regenerate the private key → Regenerate the CSR → Reapply for a certificate.

  The process is as follows:

  1. Generate a new private key

openssl genrsa -out new.key 2048

  2. Generate new CSR

openssl req -new -key new.key -out new.csr

  Fill in the domain name information.

  3. Reapply for SSL with a new CSR

  Submit new.csr to the certificate platform and wait for re-issuance. Free certificates can be reapplied for directly without being affected.

  Ⅵ. Incorrect private key format causes deployment failure

  Sometimes the private key exists, but Nginx or Apache reports an error:

PEM routines:get_name:no start line

  This is usually a formatting issue.

  A correct private key should look like this:

-----BEGIN PRIVATE KEY-----
...
-----END PRIVATE KEY-----

  If it's PKCS8, it can be converted:

openssl rsa -in old.key -out new.key

  VII. Special Cases in Panel Environments

  When applying for a certificate using the BT Panel, a private key is automatically generated. If the network connection is interrupted or the application exits abnormally, only a CSR may be generated.

  Solution: Delete the original certificate → Reapply.

  Path Cleanup:

rm -rf /www/server/panel/vhost/cert/your domain

  Then redeploy.

  Docker/Container Environment: After the container was rebuilt, the private key was not mounted to the volume, resulting in file loss.

  Recommendation: Map the certificate directory to the host machine.

  VIII. How to Avoid Private Key Issues in the Future

  This is a key concern for many website owners.

  We recommend developing the following habits:

  First, back up the key file immediately after generating the certificate.

  Second, copy the private key when migrating the server.

  Third, store certificates in a fixed directory.

  Fourth, enable persistent storage when using automated scripts to request certificates.

  The inability to generate a private key for an SSL certificate is not essentially a "certificate problem," but rather a deviation in the key management process. Understanding the core logic that "the private key exists before the certificate" allows for quick identification of most issues.

  For novice website owners, the most important thing is to know where the private key is generated, how to back it up, and how to rebuild it if lost.

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